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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85831092_85832050_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85831092 - 85832050
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTGATGTTAATC
Flanking Amino Acid:
TPFEIFLKDKRYQDDFGPLL
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.5
39.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
76.3
0.59
0.8
73.2
31.7
Minor 5ss
31
-2.2
3.3
39.7
46.3
Minor BPS
52.3
0.05
2.1
66.1
40.2

Associated Gene:

Gene:
QTRT2
Ensembl Gene ID:
ENSAPLG00000001359
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001435
85830011 - 85841854
11844