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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85832172_85833754_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85832172 - 85833754
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAG
5'SS Class:
major
3'SS Sequence:
TTTTTATTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAG
Flanking Amino Acid:
YDYQPGPEAAAVLKQNGAQD
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.7
0.71
1
83.1
31.3
Minor 5ss
37.3
-1.4
3.1
47.3
48.3
Minor BPS
66.5
0.38
1.7
73.73
38.3

Associated Gene:

Gene:
QTRT2
Ensembl Gene ID:
ENSAPLG00000001359
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001435
85830011 - 85841854
11844