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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85837391_85839229_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85837391 - 85839229
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGCACAAACC
Flanking Amino Acid:
PCPSGYNTNKAVSVWGSSGR
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86.4
0.82
0.9
84.7
30.1
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
46.7
-0.2
2.3
68.37
43

Associated Gene:

Gene:
QTRT2
Ensembl Gene ID:
ENSAPLG00000001359
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001435
85830011 - 85841854
11844