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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85841556_85841657_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85841556 - 85841657
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CGTCCGGGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATTTACTTATTT
Flanking Amino Acid:
PPVAQLTLSFMAELHEVLEE
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
77
31.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
60.5
0.24
1.1
52.3
41.7
Minor 5ss
34
-1.8
2.7
42.8
36.9
Minor BPS
65.2
0.55
1.8
83.5
37.5

Associated Gene:

Gene:
QTRT2
Ensembl Gene ID:
ENSAPLG00000001359
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001435
85830011 - 85841854
11844