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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85842026_85842842_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85842026 - 85842842
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTGCG
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
CTTTCTTTAAAG
Flanking Amino Acid:
RRLSAPARPQRVEQASEYAI
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
62.4
42.4
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
80.7
0.69
1
82
27.2
Minor 5ss
34.5
-1.8
2.9
41.8
44.9
Minor BPS
71.4
0.53
1.5
72.3
40.7

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688