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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85842985_85845291_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85842985 - 85845291
Intron Length:
2307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTGATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
TTCCTTGTGATA
Flanking Amino Acid:
LQDHDEACKEARELLSSWMK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
70.4
0.46
1
68
37.7
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
45.8
-0.3
1.9
58.07
36.2

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688