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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85846124_85846628_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85846124 - 85846628
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCAGG
5'SS Class:
major
3'SS Sequence:
TCTTCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
CCTGCATTGACT
Flanking Amino Acid:
RITMELRHKQVKENRLRRQK
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
61.4
44.7
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
83.9
0.76
0.7
76.5
32.1
Minor 5ss
39.4
-1.2
2.7
48.3
47.5
Minor BPS
56.5
0.29
1.8
71.95
45.2

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688