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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85846853_85847595_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85846853 - 85847595
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
GCTTACTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GTTTGCTTACTT
Flanking Amino Acid:
KRQTMAEARRMEGKRQEESQ
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
62.8
42
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
79
0.65
0.9
69.3
41.4
Minor 5ss
32.3
-2
3.4
43
44.3
Minor BPS
59.5
0.38
2.1
80.32
42.1

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688