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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85847753_85849888_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85847753 - 85849888
Intron Length:
2136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCATC
5'SS Class:
major
3'SS Sequence:
CTCTCCCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCTGAAACT
Flanking Amino Acid:
LIKIHTNKQRCLQRHFSAWF
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
69.9
41.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
75.4
0.57
0.8
69.7
29.9
Minor 5ss
45.2
-0.5
2.8
57.7
40.9
Minor BPS
59.6
0.38
2.3
87.23
39

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688