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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85850862_85852211_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85850862 - 85852211
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATGCCAGATCT
Flanking Amino Acid:
NQHQVLQHNKPTETRLIQEE
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
41.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
32.7
-2
3.4
48.4
47.3
Minor BPS
45.4
-0.2
2
65.88
44

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688