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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85852679_85853185_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85852679 - 85853185
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAGCC
5'SS Class:
major
3'SS Sequence:
TTCCTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTCCTTTTCACA
Flanking Amino Acid:
KQSKCNATPLSLPLSHRSQN
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
62
35
Major BPS
77.5
0.68
1
79.6
33
Major PPT
86.7
0.83
0.7
82.7
25.9
Minor 5ss
37.1
-1.5
3.4
51.1
45.6
Minor BPS
54.8
0.14
1.7
67.58
39.4

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688