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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85854854_85856225_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85854854 - 85856225
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCCTCCATT
Flanking Amino Acid:
AKQQREEEKLAQMKAEEEAR
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.1
36
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.5
0.46
1
67.9
36.9
Minor 5ss
32.7
-2
3.1
37.9
40.9
Minor BPS
59.5
0.38
2
79.83
42.7

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688