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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85856328_85857391_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85856328 - 85857391
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCAAA
5'SS Class:
major
3'SS Sequence:
CGTTGTATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GCTGAATTAAAA
Flanking Amino Acid:
RREERRLQKQKELEKQRRLE
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.2
61.3
41
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.7
0.6
0.9
69.8
40.3
Minor 5ss
37.7
-1.4
3.1
48.2
47.5
Minor BPS
45.9
-0.3
1.9
55.75
42.5

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688