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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85858833_85859197_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85858833 - 85859197
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCCTG
5'SS Class:
major
3'SS Sequence:
CTTCCTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCATTCTCACCT
Flanking Amino Acid:
LRQSFRSWLKYKDNMASLEE
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.2
57.4
46.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.3
0.68
0.7
72.7
32
Minor 5ss
43.9
-0.7
2.8
56.6
47.6
Minor BPS
48.7
-0
1.9
64.08
46.3

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688