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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85859353_85860529_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85859353 - 85860529
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTTTTCATTT
Flanking Amino Acid:
KLMTATEHSDKRLMLNAFKA
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
73.9
29.7
Major BPS
100
1.24
0.5
100
0
Major PPT
82.1
0.72
0.8
82
28.8
Minor 5ss
29.2
-2.4
3.1
32.8
35.7
Minor BPS
47.2
-0.1
1.7
62.54
42.9

Associated Gene:

Gene:
CCDC191
Ensembl Gene ID:
ENSAPLG00000000755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000836
85841975 - 85860662
18688