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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85867315_85868157_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85867315 - 85868157
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GTCTCTTTCCCT
Flanking Amino Acid:
FYCPGAYSDYSSALSFTCVW
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
74.2
36.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
67.9
0.4
1
60.8
40.3
Minor 5ss
29.2
-2.4
3.1
40
45.5
Minor BPS
42.5
-0.4
3.6
71.8
45.5

Associated Gene:

Gene:
ZDHHC23
Ensembl Gene ID:
ENSAPLG00000015634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016294
85867047 - 85870217
3171