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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85876695_85878391_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85876695 - 85878391
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
TTCTGTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTTCTTCACT
Flanking Amino Acid:
SRTSSHKCRLRVSAEVKYKK
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
60
46.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
80.9
0.7
0.8
80.4
31.6
Minor 5ss
36.5
-1.5
3.2
48.4
47.2
Minor BPS
78.1
0.97
1.6
95.32
31.5

Associated Gene:

Gene:
GRAMD1C
Ensembl Gene ID:
ENSAPLG00000015479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032461
85870867 - 85919412
48546
ENSAPLT00000023718
85870867 - 85908091
37225
ENSAPLT00000016163
85871006 - 85909003
37998