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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85879753_85880531_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85879753 - 85880531
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGCAC
5'SS Class:
major
3'SS Sequence:
ATTTCTCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTGCATAATT
Flanking Amino Acid:
QRFLNSRSIVDAVSTPWNRD
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
65.9
39.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.9
0.56
0.9
67.6
38.7
Minor 5ss
31.1
-2.2
3.3
41.5
45.2
Minor BPS
65.3
0.56
2
88.85
36.2

Associated Gene:

Gene:
GRAMD1C
Ensembl Gene ID:
ENSAPLG00000015479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032461
85870867 - 85919412
48546
ENSAPLT00000023718
85870867 - 85908091
37225
ENSAPLT00000016163
85871006 - 85909003
37998