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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85892116_85896500_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85892116 - 85896500
Intron Length:
4385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
CGCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TAGTTCTTGACT
Flanking Amino Acid:
RLWQNVLLDKRLTKQEFWQL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
82.9
0.74
0.8
80.3
31.8
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
75.7
0.89
1.1
83.44
37.7

Associated Gene:

Gene:
GRAMD1C
Ensembl Gene ID:
ENSAPLG00000015479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032461
85870867 - 85919412
48546
ENSAPLT00000023718
85870867 - 85908091
37225
ENSAPLT00000016163
85871006 - 85909003
37998