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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85896582_85897737_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85896582 - 85897737
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAAC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTTTGTACCT
Flanking Amino Acid:
AIQIATKGEKFFFTSFSARD
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
73.6
30.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
27.7
-2.6
2.9
33.7
41.9
Minor BPS
49.9
0.07
2.2
77.06
40.2

Associated Gene:

Gene:
GRAMD1C
Ensembl Gene ID:
ENSAPLG00000015479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032461
85870867 - 85919412
48546
ENSAPLT00000023718
85870867 - 85908091
37225
ENSAPLT00000016163
85871006 - 85909003
37998