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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85897834_85899133_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85897834 - 85899133
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGATCT
5'SS Class:
major
3'SS Sequence:
CTTTTCTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATCTTATTAAAT
Flanking Amino Acid:
HSNIFRWETTISIALKDITF
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
69.2
36.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.7
0.6
0.8
77
31.7
Minor 5ss
42.8
-0.8
3.1
63.5
41.4
Minor BPS
60.2
0.4
1.7
76.55
39.6

Associated Gene:

Gene:
GRAMD1C
Ensembl Gene ID:
ENSAPLG00000015479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023718
85870867 - 85908091
37225
ENSAPLT00000016163
85871006 - 85909003
37998
ENSAPLT00000032461
85870867 - 85919412
48546