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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85918455_85919349_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85918455 - 85919349
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCTTTCTCAAGT
Flanking Amino Acid:
GAAPPSPPSMEVHEVDHGLI
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.9
40.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.3
0.68
0.8
75.5
32.9
Minor 5ss
37.7
-1.4
3.3
48.2
42.1
Minor BPS
54.2
0.21
1.9
71.07
46.1

Associated Gene:

Gene:
GRAMD1C
Ensembl Gene ID:
ENSAPLG00000015479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032461
85870867 - 85919412
48546