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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85926630_85929134_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85926630 - 85929134
Intron Length:
2505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATATTT
5'SS Class:
major
3'SS Sequence:
CCTTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTTTCCTTCTCC
Flanking Amino Acid:
GTKLRIRRALGLFGIEESIG
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
74.4
36.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
77.4
0.62
0.7
69.1
31.5
Minor 5ss
43.5
-0.7
3.1
57.2
46.9
Minor BPS
45.9
-0.3
3.6
73.85
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015436
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016075
85923896 - 85929551
5656