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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85934673_85939723_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85934673 - 85939723
Intron Length:
5051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAGAC
U12 Branch Point Sequence:
TGAGCCCAGACT
Flanking Amino Acid:
GQGWPKDKTDWCCHRHDCCY
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
45.8
-0.2
1
37.9
30.5
Major PPT
71.3
0.48
1
75.8
26.8
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
45.9
-0.2
2.1
65.52
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015432
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016072
85932072 - 85941787
9716