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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85957752_85958950_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85957752 - 85958950
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGGA
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
CTAATGGTAATT
Flanking Amino Acid:
PKNSHWYSPPETDMTTNCIS
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.2
65
41.2
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
43.7
-0.7
3
58.5
46
Minor BPS
41.6
-0.5
2.5
60.3
43.9

Associated Gene:

Gene:
CLDND1
Ensembl Gene ID:
ENSAPLG00000015243
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015888
85956813 - 85959239
2427