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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85987129_85987796_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85987129 - 85987796
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TATATCTTACCA
Flanking Amino Acid:
AAQTPVVVGTRTFLIRETTK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
40.1
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
83.1
0.75
0.8
77.8
31
Minor 5ss
37.7
-1.4
3.1
48.6
47.2
Minor BPS
63
0.41
1.6
72.94
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015865
85987029 - 85988357
1329