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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85987957_85988296_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85987957 - 85988296
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
GAAACCTCATGT
Flanking Amino Acid:
LILLLSTTVPEVHSKSIFER
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
73.1
43.9
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
80.7
0.69
0.7
75.8
26.1
Minor 5ss
38.3
-1.3
3
51.2
45.1
Minor BPS
43.1
-0.4
2
56.41
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015865
85987029 - 85988357
1329