About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85995874_85997277_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85995874 - 85997277
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TGTGCTTTTACC
Flanking Amino Acid:
SYQLNPLLQRDVSLHNSLPL
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.5
31.6
Major BPS
74.2
0.6
1
67
39.4
Major PPT
74.6
0.55
0.8
67.1
34.3
Minor 5ss
31.6
-2.1
3.2
38.8
46.5
Minor BPS
60.5
0.31
1.7
71.15
40.4

Associated Gene:

Gene:
ILDR1
Ensembl Gene ID:
ENSAPLG00000015216
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047631
85994234 - 86007254
13021
ENSAPLT00000037164
85994234 - 86006508
12275
ENSAPLT00000015853
85994234 - 86006594
12361