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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86004858_86006530_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86004858 - 86006530
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
TGAGGGCTGACT
Flanking Amino Acid:
ACLLLACLPAGCLSLLVTVQ
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
37.7
-0.8
2.5
57.18
45.4

Associated Gene:

Gene:
ILDR1
Ensembl Gene ID:
ENSAPLG00000015216
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015853
85994234 - 86006594
12361