Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86018978_86020356_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

86018978 - 86020356

Intron Length:

1379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATGC

5'SS Class:

strong_major

3'SS Sequence:

AATGCAACTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

ATAAATGCAACT

Flanking Amino Acid:

DNGQPIWYAQHIAEFLVFCF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.95

0.8

75.9

34.8

Major BPS

70.8

0.52

70.6

31.6

Major PPT

61.7

0.26

49.5

43.2

Minor 5ss

38.3

-1.3

3.1

50.9

45.7

Minor BPS

41.9

-0.5

2.2

61.48

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015067

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015695

86017562 - 86032694

15133