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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86020496_86021733_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86020496 - 86021733
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CCTTTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ACTGCAAGAAAT
Flanking Amino Acid:
TYLMATTALDRSVRIYDFIS
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
79.7
35.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
74.2
0.55
0.8
68.8
30.7
Minor 5ss
38.9
-1.2
2.8
52
39.1
Minor BPS
41.5
-0.5
2
59.08
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015067
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015695
86017562 - 86032694
15133