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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86023840_86025199_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86023840 - 86025199
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATC
Flanking Amino Acid:
EQNGDVLATGSKDKTVFFFA
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
77.9
36.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
88.8
0.87
0.7
90.1
24.5
Minor 5ss
45.9
-0.4
2.5
54.6
42.8
Minor BPS
64.3
0.43
1.7
77
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015067
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015695
86017562 - 86032694
15133