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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86025311_86027021_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86025311 - 86027021
Intron Length:
1711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCCCCATACTT
Flanking Amino Acid:
QALQWSPPSHVESMLLILCE
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.5
28.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.1
0.77
0.9
79.9
37.7
Minor 5ss
33
-1.9
2.8
41.3
38.3
Minor BPS
48.4
-0
1.9
67.08
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015067
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015695
86017562 - 86032694
15133