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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86046421_86047844_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86046421 - 86047844
Intron Length:
1424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TGACCTGCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTAATCATT
Flanking Amino Acid:
EHSQELKEWEKLMMLTKENT
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
60.9
0.24
1
55.3
39.8
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
47.7
-0.1
2.2
77.5
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019286
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021090
86046244 - 86049400
3157