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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86052116_86052675_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86052116 - 86052675
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCCA
5'SS Class:
major
3'SS Sequence:
TCTCTCATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTCTCTCATT
Flanking Amino Acid:
PRDYSPDMQQSHEETNALLQ
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
63.4
42.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.3
0.73
0.8
73.8
35.4
Minor 5ss
30
-2.3
3.4
39.7
45.8
Minor BPS
58.1
0.34
2
84.17
37.2

Associated Gene:

Gene:
BOC
Ensembl Gene ID:
ENSAPLG00000015054
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015691
86050566 - 86067037
16472