About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86054524_86055608_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86054524 - 86055608
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CCATTCTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TCTCTGCTAATT
Flanking Amino Acid:
NETTIMLKWMYIPASNNNTP
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
78.9
0.65
0.8
73
31.6
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
46.5
-0.1
2.3
69.25
42.2

Associated Gene:

Gene:
BOC
Ensembl Gene ID:
ENSAPLG00000015054
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015691
86050566 - 86067037
16472