Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86060640_86061130_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

86060640 - 86061130

Intron Length:

491

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTCCC

5'SS Class:

major

3'SS Sequence:

TTTTGCCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TCACTTTTGACG

Flanking Amino Acid:

AMVQLRTARPGATLNPGGDA

Intron Amino Acid Position:

408

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.3

70.1

38.5

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

88.2

0.86

0.7

85.4

29.3

Minor 5ss

30.9

-2.2

2.7

37.3

39.8

Minor BPS

54.9

0.01

1.3

55.72

Associated Gene:

Gene:

BOC

Ensembl Gene ID:

ENSAPLG00000015054

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015691

86050566 - 86067037

16472