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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86062769_86063288_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86062769 - 86063288
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
ACCTTATGACCA
Flanking Amino Acid:
VKHEWLEASRDNYLIMPSGN
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
43.4
-0.5
1.9
50.93
40.6

Associated Gene:

Gene:
BOC
Ensembl Gene ID:
ENSAPLG00000015054
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015691
86050566 - 86067037
16472