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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86063436_86066265_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86063436 - 86066265
Intron Length:
2830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
GTTCCCCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGGCAA
U12 Branch Point Sequence:
CTGTCCTTGCTT
Flanking Amino Acid:
ASVPAVVTLANLKDFKFDGQ
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67.7
37.5
Major BPS
42.3
-0.4
1.3
44.7
38.6
Major PPT
72.2
0.5
1
65.8
35.9
Minor 5ss
32.5
-2
2.7
38.4
34.2
Minor BPS
46.2
-0.2
3.5
74.24
43.6

Associated Gene:

Gene:
BOC
Ensembl Gene ID:
ENSAPLG00000015054
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015691
86050566 - 86067037
16472