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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86157248_86157876_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
86157248 - 86157876
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACG|GCCGGGCCC
5'SS Class:
major
3'SS Sequence:
GCTGCGAGCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
TGCACATGGAGC
Flanking Amino Acid:
TAAPSARRPPRAAKVSLAEV
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.3
57.9
37.8
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
43
-0.4
1.7
38
38.7
Minor 5ss
16.2
-3.9
3.7
26
36.4
Minor BPS
41.4
-0.6
2
49.35
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027848
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030710
86153207 - 86157944
4738