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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86157962_86158633_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86157962 - 86158633
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
CAGTTTTGAGAT
Flanking Amino Acid:
RHRPYLALQQVEQCLKRLWK
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
83.3
0.75
0.7
76.9
31.9
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
43.8
-0.3
1.7
54.52
41.3

Associated Gene:

Gene:
NEPRO
Ensembl Gene ID:
ENSAPLG00000024177
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038658
86157734 - 86161879
4146