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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86158711_86158816_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86158711 - 86158816
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGTATTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTCTTTGTATT
Flanking Amino Acid:
SIETLAELIPKKNKFEAHAE
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
79
35.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
71.5
0.48
1
64.9
41.2
Minor 5ss
45.7
-0.5
2.8
61.4
37.1
Minor BPS
47
-0.1
1.7
66.29
38.8

Associated Gene:

Gene:
NEPRO
Ensembl Gene ID:
ENSAPLG00000024177
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038658
86157734 - 86161879
4146