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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86158949_86159287_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
86158949 - 86159287
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
GTGTAATCTCCAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTAGCCTTAACT
Flanking Amino Acid:
RLLDCCCKAFLLSVKHLCSQ
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
70
0.45
1
59.3
46
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
83.6
1.13
1.2
93.01
35.4

Associated Gene:

Gene:
NEPRO
Ensembl Gene ID:
ENSAPLG00000024177
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038658
86157734 - 86161879
4146