About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86160701_86160804_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86160701 - 86160804
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTTCTGTTATT
Flanking Amino Acid:
LRPSRPPTQEDRYLTSTPFK
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.5
0.8
0.8
83.8
31.2
Minor 5ss
36.9
-1.5
3.2
48.2
47.9
Minor BPS
50.7
0.1
2.3
77.55
39.3

Associated Gene:

Gene:
NEPRO
Ensembl Gene ID:
ENSAPLG00000024177
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038658
86157734 - 86161879
4146