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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86163424_86163618_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86163424 - 86163618
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGAGGAA
U12 Branch Point Sequence:
TTGTCTCTTACA
Flanking Amino Acid:
DLVIEFITEMTHKAMSIGRQ
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
40.7
-0.5
1.3
29.2
33.9
Major PPT
86
0.81
0.8
80.4
31.7
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
54.9
0.15
2
71.87
40.1

Associated Gene:

Gene:
TAF13
Ensembl Gene ID:
ENSAPLG00000017681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041090
86163253 - 86164005
753