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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86163717_86163794_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86163717 - 86163794
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
CGCCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
CAGGGCTCACCC
Flanking Amino Acid:
GRRKRLFSKELRCMMYGFGD
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.4
50.6
47.7
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
68.2
0.41
0.8
61.3
29.1
Minor 5ss
29.1
-2.4
2.7
27.8
36.3
Minor BPS
39
-0.8
2.1
42.92
44.5

Associated Gene:

Gene:
TAF13
Ensembl Gene ID:
ENSAPLG00000017681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041090
86163253 - 86164005
753