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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86166052_86166476_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86166052 - 86166476
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTTGTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAC
U12 Branch Point Sequence:
TTTGTTTCCACA
Flanking Amino Acid:
QGCFPQLFLVSSVEFSGIHL
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
52.8
0.07
1
50.7
33.9
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
47.7
-0.1
2
66.33
40.9

Associated Gene:

Gene:
GTPBP8
Ensembl Gene ID:
ENSAPLG00000009443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009835
86165967 - 86168370
2404