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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86167362_86167840_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86167362 - 86167840
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATCCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACATTTTTAAAT
Flanking Amino Acid:
AVEVRVSKTPGHTKKMNFFK
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.3
0.55
0.8
65.7
35.4
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
63
0.49
1.3
71.8
39.2

Associated Gene:

Gene:
GTPBP8
Ensembl Gene ID:
ENSAPLG00000009443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009835
86165967 - 86168370
2404