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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86173140_86173899_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86173140 - 86173899
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TGATGCTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CCTTCCTGATGC
Flanking Amino Acid:
FHQMYQLTVLVPPRLSLYCD
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
76.4
0.59
1
69.5
41.4
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
47.5
-0.2
2
58.6
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015329
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015967
86171760 - 86174878
3119