About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86211808_86214781_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
86211808 - 86214781
Intron Length:
2974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGTCTATA
5'SS Class:
weak_major
3'SS Sequence:
AAGCACAGGCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TTTCCCTCCAAA
Flanking Amino Acid:
EWNSKAVSDILG
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.2
66.7
40.4
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
47.1
-0.1
1.1
33
40.4
Minor 5ss
45.1
-0.5
2.5
50.5
46.1
Minor BPS
49.7
-0
2.1
70.84
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023428
86211802 - 86219580
7779